Laser microtools and
early events of DNA repair
COMET assay, COMET FISH and Immune Fluorescent COMET Assay (IFCA)

Paulius Grigaravicius, Alexander Rapp, Melanie Struwe
in cooperation with Brigitte Altenberg EMBL Heidelberg
Studying DNA repair means, among
others, to study the temporal sequence
of events immediately after DNA damage induction, i.e. the kinetics.
Getting the time zero point is difficult with most techniques so far
employed. The laser microbeam allows to get this starting point with
sub-second accuracy. For that purpose, the laser is directed into a
small region of the cell nucleus and induces there DNA double strand
breaks. The recruitment of different, fluorescently (GFP) labeled
DNA repair
proteins is then studied by direct observation in the microsope.
Major results are:
i) Pre-irradiation with red
light protects DNA against UV damage
He-Ne laser irradiation protects B
-lymphocytes from UV A induced DNA damage 2001 Rad Environ
Biophys 40 77 - 82
ii) Human chromosomes with high
active gene density are less prone to DNA damage than inactive
chromosomes
UV A breakage sensitivity of human chromosomes as
measured by COMET-FISH depends on gene density and not on chromosome
size 2000 Photochem Photobiol 56 106 -
117
iii) All double strand break
repair starts with the supposedly error prone non homologous end
joining, the
switch to error free
homologous recombination repair is possible only after approx. 1 min,
when NBS1 respectively the MRN complex has bound 2009
ChemPhysChem 10, 79 - 85 see also below
iv) A number of drugs used in
pharmacology which are not genotoxic by themselves do become so in UV
irradiated rats.
Repair of Sparfloxacin Induced Photochemical
DNA Damages in vitro and in vivo 2009 J Invest
Dermatol 129, 699 - 704
A direct view by
immunofluorescent comet
assay (IFCA) of DNA damage induced by nicking and cutting
enzymes,
ionizing 137Cs
radiation,
UV-A laser
microbeam irradiation
and the radiomimetic drug bleomycin 2009
Mutagenesis
24,
191-197
Laser Microbeams and Optical Tweezers in
Ageing Research PDF 2009
ChemPhysChem 10, 79 - 85
Background Information
Comet-assay
and Comet-FISH (Teaching text)
IFCA –
Immunofluorescent Comet Assay (Poster)
Uncovering
the earliest steps of DNA double strand break repair
(Poster)
Laser
microbeam induced DNA damages and repair (Poster)
UV-A
Induced DNA Damage (Teaching Text)
DNA
Double Strand
Repair (Teaching Text)
Intrinsic Oxidative
DNA Damages (Teaching Text)