3D Structures of Biological Macromolecules


Course Material

compiled by

Jürgen Sühnel
Biocomputing Group | Leibniz Institute for Age Research - Fritz Lipmann Institute | Jena Centre for Bioinformatics

[Last update: 22/02/2008]


Gallery


Review

Rolf Hühne, Frank-Thomas Koch and Jürgen Sühnel
A comparative view at comprehensive information resources on three-dimensional structures of biological macro-molecules
Briefings in Functional Genomics and Proteomics Advance Access published October 23, 2007 (doi:10.1093/bfgp/elm020)
[PDF]


Lectures, Excercises

2007/2008

Lectures

               [PPT (~ 18.9 Mbytes) | PDF (~ 9.6 Mbytes); version date: 06/11/2007]

                [PPT (~ 8.9 Mbytes) | PDF (~ 4.5 Mbytes); version date 18/12/2007]

                [PPT (~8.0 Mbytes) | PDF (~3.2 Mbytes); version date: 07/01/2008]

                [PPT (~3.8 Mbytes) | PDF (~0.9 Mbytes); version date: 15/01/2008]

               [PPT (~6.6 Mbytes) | PDF (~2.5 Mbytes); version date: 22/01/2008]
               [PPT (~6.6 Mbytes) | PDF (~3.2 Mbytes); version date: 22/01/2008].
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               [PPT (~8,4 Mbytes) | PDF (~4.1 Mbytes); version date: 22/02/2008].

Excercises

             [PPT (~ 3.2 Mbytes) |  PDF (~ 0.8 Mbytes); version date 19/12/2007]
            [PPT ( ~5.0 Mbytes) | PDF (~1.7 Mbytes)

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2006

Lectures

The Jena Library of Biological Macromolecules - JenaLib

3D Structures of Biological Macromolecules

Excercises

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2005


Databases and Web Resources

Experimental Methods for 3D Structure Determination of Biological Macromolecules

3D Structure Databases

Comprehensive resources of biological macromolecules

Nucleic-acid containing structures only

Protein structures only

Structure-based classification of proteins

Small molecules

Other Databases and Web Resources

Molecule Superposition

Secondary Structure Prediction and Fold Recognition (Threading)

Ab Initio Structure Prediction

General Purpose Structure Prediction

Other


Molecular Graphics and Modeling Programs


[some of these programs are primarily devoted to visualization and include only a few additional analysis tools; for others visualization is only a minor part of functionality]

Commercial

Free (for academic usage)


Molecular Dynamics Packages

Quantum Chemistry Programs

Other Programs


Other Information


Original Articles and Historical Views


Books